Comments on independence

In statistics and probability theory, independence is a power condition for two random variables. For two random variables X and Y, they are independent if knowing X will not change the probability distribution of Y (and vice versa).

A related but distinct concept is correlation, which is a quantity between -1 and 1 that quantifies linear relationship between two random variables. Independence implies 0 correlation BUT not the other way around. Here’s an epic example for 0 correlation but no independence. Assume X might be -1, 0 ,or 1 with equal (1/3) probability. Let Y=X^2. Then it is easy to see that X and Y has 0 correlation but they are dependent to each other. One may interpret correlation as the linear dependence between two random variables. Thus, 0 correlation only shows that there is no the linear dependence but we might have higher order dependence. In the previous example, X and Y are in the quadratic relationship so that correlation–the linear dependence–cannot capture it.

Although independence is a stronger statement than correlation, they are equivalent if two random variables are jointly Gaussian. Namely, for two normal random variables, 0 correlation implies independence. This is an appealing feature for Gaussian and is one of the main reasons some researchers would like to make Gaussian assumption.

A more mathematical description for independence is as follows. Let F(x) and F(y) denotes the marginal (cumulative) distribution of random variables X, Y, respectively. And let F(x,y) denote the joint distribution. If X and Y are independent, then F(x,y) = F(x)F(y). Namely, the joint distribution is the product of marginals. If X and Y has densities p(x) and p(y), then independence is equivalent to say p(x,y) = p(x)p(y) (again, joint density equals to the product of marginals).

The independence is a power feature in probability and statistics. Some people even claim that independence is the key feature that makes “probability theory” a distinct field from measure theory. Indeed, independence makes it possible for the concentration of measure for a function of many random variables (concentration of measure: probability concentrates around a certain value; just think of law of large number).

Now let’s talk about something about statistics–test for independence. Given pairs of observations, say (X_1, Y_1), … ,(X_n, Y_n) that are random sample (IID). To goal is to test if the pair (X, Y) are independent to each other.

When two random variables are discrete, a well-known method is the “Pearson’s chi-squared test for independence”
( Pearson’s method is to compare the theoretical behavior of joint distribution under independence case (marginals are still based on sample) to the real observed joint distribution.

When two variables are continuous, things are more complicated. However, if we assume the joint distribution is Gaussian, we can simply test the correlation. If the correlation is non-zero, then due to the powerful feature of Gaussian–independence is equivalent to 0 correlation–we can claim they are dependent.

If we do not want to assume Gaussian, there are many nonparametric tests for independence. Here I list four famous approaches.

  1. Hoeffding’s Test. Hoeffding, Wassily. “A non-parametric test of independence.” The Annals of Mathematical Statistics (1948): 546-557
    ( This test basically use empirical cumulative distribution (EDF) of F(x,y) versus products of marginal EDF and then take supreme over both x and y. This is like a KS-test for independence.
  2. Kernel Test. Rosenblatt, Murray. “A quadratic measure of deviation of two-dimensional density estimates and a test of independence.” The Annals of Statistics (1975): 1-14 ( Kernel test is very similar to Hoeffding’s test but we now use the kernel density estimator to estimate both joint density and marginals and then compare joint KDE to the product of marginal KDEs.
  3. Energy Test (distance covariance/correlation). An introduction is in []. Székely, Gábor J., Maria L. Rizzo, and Nail K. Bakirov. “Measuring and testing dependence by correlation of distances.” The Annals of Statistics 35, no. 6 (2007): 2769-2794 ( They derive a quantity called distance correlation and then show that the scaled version of this distance correlation converges to some finite value when two random variables are independent and diverges under dependence.
  4. RKHS Test (RKHS: Reproducing Kernel Hilbert Space). Gretton, Arthur, and László Györfi. “Consistent nonparametric tests of independence.” The Journal of Machine Learning Research 11 (2010): 1391-1423
    ( This test uses the fact that independence implies that under all functional transformations for the two random variables, they are still uncorrelated (0 correlation). Then they use the reproducing property for the RKHS and kernel trick (note: this kernel is not the same as the kernel in kernel test) to construct a test for independence.

As a concluding remark, I would like to point out that there are some ways to “quantify” dependence. For instance, alpha-mixing, beta-mixing are some definitions for dependence among sequence of random variables that are commonly used in Time-Series. Wikipedia has a short introduction about these dependence measure [].


Data Visualization and Statistics

Data visualization (and information visualization) is now a hot and important topic in both academics and industry.

Data visualization is concerned with how to visualize complicated data. One of the major goal for data visualization is to display important features in an intuitive and clear ways so that people without professional knowledge are able to understand. Without conducting a sophisticated analysis, some clear patterns can be directly observed after visualization. This is particularly useful for scientists to promote their work to general audience and potential collaborators.

Moreover, data visualization serves as a tool for exploratory data analysis. That is, we can visualize the data first and according to the structure we observe from the visualization, we choose how to analyze the data. When the dimension of the data (number of variables) is greater than 3, this technique is very useful.

Statistics and data visualization can have more interplay. With proper cooperation, statistics and data visualization can help solving problems from each other.

In data visualization, a problem is that we discard part of the information when we visualize the data. If the information we throw away is critical to our research, we will get into trouble. Thus, there is a need to study the information that each visualization approach discards and statisticians are perfect to do this job. Many visualization tools use some summary statistics and keep track of these features when visualizing; statistical analysis for these summaries allows us to understand what kind of information the summary provide and what type of information is ignored.

For statistics, a common problem for statistical analysis is that we cannot see the result we have analyzed. For instance, when estimating a multivariate function or a “set” in high dimensions, like a region of interest, we cannot see the result. A more concrete example is “clustering” at dimension greater than 3; it is hard to really see clusters in high dimensions. This problem is especially severe in nonparametric statistics; the “parameter of interest” is often infinite dimensional and it’s hard for statistician to “see” the estimator. However, tools from data visualization may provide helps for this problem. We can use the approaches from data visualization to display our result. Despite the fact that we may loss some information, we can have a rough idea how does our estimator look like and we can fine-tune our analysis accordingly.

The following two papers are examples for combining data visualization and statistics:

1. Gerber, Samuel, and Kristin Potter. “Data analysis with the morse-smale complex: The msr package for r.” Journal of Statistical Software (2011). URL:

2. Chen, Yen-Chi, Christopher R. Genovese, and Larry Wasserman. “Enhanced mode clustering.” arXiv preprint arXiv:1406.1780 (2014). URL:

Here are some useful links about data visualization (thanks to Yen-Chia Hsu@CMU – Robotic Institute):

Random thoughts: Statistics vs Statistical engineering

Recent days I attended many talks given by people from statistics and statistical engineering (machine learning, data mining…etc).

I notice that people doing theories in statistical engineering is quiet similar to people in statistics. We do lots of statistical analysis on the method/algorithm and build some useful bounds for the convergence rate.

However, I just found that there’s a feature for people in statistics that people in theoretical engineering usually do not have: seeking for the asymptotic distributions. It is true that many people in statistical engineering try to find the bounds on convergence rate. The bounds are like their destination; they usually not go further for the distribution. In contrast, people in statistics will not stop at the rate; statisticians are targeting at the asymptotic distributions.

The reason why statisticians care about asymptotic distribution may be related to the statistical inference. The statistical inference such as confidence intervals, hypothesis tests, requires knowledge about the distribution of a certain statistics. Knowing the bounds is not sufficient for carrying out the inference. Both confidence intervals (or more general, confidence sets) and hypothesis test require the distributions.

This might also be the reason why courses in ML emphasizes more on the Hoeffding’s inequality, Bernstein’s inequality while in statistics, the courses focus more on the central limit theory and chi-square approximation.

Usually, finding the bounds on convergence rate is much easier than finding the true distribution. This might be a reason why many popular methods in statistical engineering are not so welcomed in statistics. The lack of asymptotic distribution reduces popularity from statisticians. However, many methods though have no asymptotic distribution, are still very useful in prediction, especially those with guarantees from probability bounds. Maybe we statisticians should not limit ourselves to those methods that are capable of statistical inference.

Anyway, I just discovered the feature for statisticians on deriving the asymptotic distributions. Maybe this is just my bias sample or maybe it is the truth. I’ll keep using this feature as a predictor to the future talks.

A non measure-theoretic explanation on almost sure convergence

In probability theory, there’re three comment convergence concepts: convergence in distribution, convergence in probability and convergence almost surely. Among them, the convergence almost surely is most abstract and many people find it hard to understand (especially people doing statistical engineering). To formally define convergence almost surely, we need to use a measure-theoretic argument. Here I try to use a concept from computer to illustrate almost sure convergence and avoid using any measure theory.

The almost sure convergence is defined on the abstract “sample” space. One can understand the sample space as the collection of “seeds” used to generate the random number for a computer. In the past, how computer generates a random number is by inputting a “seed” and according to this seed to output a series of values. If we input the same seed, the output value will be the same.

A random variable can be interpreted as a function (or a program) that input a “seed” and output a value. The function is fixed; that is, given the same seed, this function will output the same value.

Having identified random variables as functions, a sequence of random variables is a sequence of functions. For a sequence of functions, given the same seed, we will have a sequence of values. If these values converge to a specific value, then we call this seed a “good seed”. Otherwise we call the seed “bad seed”.

An example for the collection of good seeds versus bad seeds

An example for the collection of good seeds versus bad seeds

Now we test all seeds to see if they are good seeds or bad seeds. After examining every seed, we get a collection of good seeds and another collection of bad seeds. The function convergence “almost surely” if the ratio of the number of bad seeds to the number of good seeds is 0; in other words, the good seeds dominates the majority. Note that if number of good seeds is infinity, we allow number of bad seeds to be finite and non-zero and we still have convergence almost surely.

As a result, almost sure convergence is defined through “the limiting behavior of the sequence under a fixed input”. And the sequence converge almost surely is like the ordinary convergence of functions excepts for “negligible ” small portion of points (i.e. input, seeds).

For convergence in probability, we can still use our good seeds bad seeds principal but the definition is slightly different. We need to set a tolerance level. Now “for each function” in the sequence, we examine the output value for a given seed and compare it with the output value for the next function in the sequence with the same input seed. If the difference is below the tolerance, we call this seed a good seed otherwise it is a bad seed. For each function in the sequence, we will get a collection of good seeds and a collection of bad seeds. So we will have a sequence of pair of collections for good seeds and bad seeds. Note that the two collections of good/bad seeds are unique for each function in the sequence.

Here we consider the ratio again. Since we have pairs of good seeds collection and bad seeds collection, we can calculate the ratio of bad seeds to good seeds. Accordingly, we obtain a sequence of ratios derived from the sequence of pairs of collections for good/bad seeds. We call the sequence of function convergence in probability if the sequence of ratios converge to 0.

A crucial difference between convergence almost surely and convergence in probability is that for almost sure convergence, we only have one pair of good/bad seeds collections; on the contrary, for convergence in probability, we have multiple pairs of good/bad seeds collections. For convergence in probability, we allow the collections of good/bad seeds to be non-stationary (that is, the collections are keeping changing) but just keep ratio going to 0. This cannot happen in the almost sure convergence since for almost sure case, we have only one pair of good/bad seeds.

For convergence in probability, we allow the bad seeds keep changing. This is not allowed in convergence almost surely.

For convergence in probability, we allow the collection of bad seeds keep changing. This cannot happen for almost sure convergence since in almost sure convergence, good/bad seeds is determined only once.

Note: For those who have learned measure theory, I define the sample spaces to be the collection of all seeds and use the counting measure. I also use the concept of Cauchy sequence to define convergence concept in convergence in probability.

Statistical Engineering

In my opinion, machine learning, data mining , pattern recognitions ..etc are branches of ‘statistical engineering’. I find the relationship between these disciplines and statistics is very similar to engineering versus science.

In engineering, people focus on the prediction, real performance and optimization for a process/procedure/algorithm. Theoretical analysis for engineers are not the as important as the empirical performance of a method. And how to use a method in solving practical problems is more important than to understand how it works. This is the case in machine learning, data mining and pattern recognition.

For instance, if a new method is proposed, it will be very popular in machine learning or data mining once the empirical performance is very good. How people classify a method as a good one is through the performance on a variety of data. In addition, those who are doing machine learning or data mining prefer to learn how to implement a method rather than to understand why this method works.

On the contrary, the scientific research emphasizes on constructing a general rule/model to explain the phenomena. Understanding a phenomenon is usually more important than knowing how to apply the outcome to real problem. For instance, astronomers develop lots of theories to explain the orbit, motion of a planet. However, astronomers do not care much about how this knowledge can be practically used in daily life.

In data analysis, the phenomena to be explained are the results from a statistical method such as the error of an estimation. For example, if a new method is proposed, it will arise statisticians’ attention once its theoretical performance is good. When there’s no theoretical guarantee for this method, statisticians will try to construct theories to explain how this method works. Besides, statisticians usually prefer understanding how a method works to learning how to implement it.

One can see that statistics versus machine learning/data mining/pattern recognition is nearly the same as science versus engineering. That’s why I use the term “statistical engineering” for these disciplines.

Hypothesis Test: a generalization of ‘proof by contradiction’

Hypothesis test is an important tool in statistics and is commonly used in scientific research. I just come up with an idea that the hypothesis test is a generalization of proof by contradiction.

The basic setting for hypothesis test is that you have a null hypothesis and an alternative hypothesis. You construct a test statistics and pick a significance level. As the test statistics is above a threshold(note*)  that is derived from the significance level and the distribution of test statistics under null hypothesis, you reject the null hypothesis.

A key idea is that the distribution of test statistics is calculated under null hypothesis. This shows a link to the proof by contradiction.

How come? Well, recall that as we perform prove by contradiction, we assume ‘something’ we want to prove that it contradicts to itself.

In the hypothesis test, we assume the ‘null hypothesis’ being true and we want to prove that it contradicts to itself. However, in probabilistic model, our data is randomly sampled. Even we’re under null hypothesis, everything is possible. We cannot use induction or a strong logical statement to show the null hypothesis contradicts to itself. However, we still want to use the way of reasoning in proof of contradiction. Hence, we use a ‘measure’ of contradiction based on data to carry out the similar reasoning.

This measure of contradiction is the test statistics compared to its behavior under null hypothesis (note**). If the test statistic shows common result as it should be in null hypothesis, then the measure of contradiction is small. That is, there is no ‘significant’ contradiction between data and the null hypothesis. In contrast, if the test statistics is very far from what it should be under null hypothesis, this shows that the measure of contradiction is high. Now as the measure of contradiction is larger than our tolerance(significance level), then we reject null hypothesis like what we conclude in proof of contradiction.

Since the hypothesis test is a generalization of proof by contradiction, a necessary condition for this reasoning to hold is that the null hypothesis and alternative hypothesis have to be compliment. Otherwise, it is possible that rejecting null hypothesis does not imply the alternative should be accepted.

In summary, we see that what we do in hypothesis test is in the similar way of proof by contradiction. The hypothesis test can be viewed as a generalization of proof by contradiction to the probabilistic model. The also explains why hypothesis test is so important in science: it allows us to ‘proof’ something based on data.


Note*: The large test statistics does not necessarily imply that we should reject null hypothesis. This really depends on the distribution of test statistics under null hypothesis. But usually in most test statistics, the larger test statistics, the more evidence against null hypothesis.

Note**: In fact, 1-(p value) is a better choice of measure of contradiction since in note*, we know that large test statistics may not imply stronger evidence against null hypothesis.